Whole Exome Sequencing (WES) Analysis (Index) Prenatal Diagnosis
Definition
This is an exome analysis performed in pregnancies with a detected fetal structural anomaly where chromosomal microarray/karyotype results are non-diagnostic; in systematic reviews, additional diagnostic yield in CMA/karyotype-negative cases was found to be 31%. Diagnostic yield varies greatly by phenotype, reaching up to 53% in isolated skeletal anomalies.
Method
Next-Generation Sequencing
Accepted sample types
EDTA Blood, Amniocentesis, Cordocentesis, CVS
Description
Analyzes exons and exon-intron junction regions belonging to ~22,000 gene regions. A maternal contamination test is included. Investigates gene-level changes of unknown cause. Analysis depth is 100X coverage.
Inheritance
Studied in a germline context, hereditary/de novo variants are searched for in fetal DNA.